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Multi site installation incorrectly showing results for both sites in popup
We have a multi-site (2 front ends) shop under a single installation of magento 1.9x. We are getting results for both shops showing up in the popup searchanise results (which we don't want). These incorrect results don't show once in the results that are returned to the page and if you click on one of the pop up results you get a page not found as you would expect.
We have already set the 'flat' catalog options to 'No'.
We are very sorry to hear that you experience this issue. Could you please provide address of your store and some examples so we can check the issue in your store?